When I was thinking about this, I thought of a lot of things I don't like about games, and tried to think of games that had those things in them. I thought "What games have you doing errands the whole time, then it turns out you were doing the wrong thing? What games have a character who is shadowy, neither evil nor good, who suddenly sides with the protaganist at the last moment and saves the day? What games have bad guys who die, but then it turns out they weren't dead after all? What games have the character being supposedly some kind of elite, awesome person not being able to perfrom certain actions, like jumping? What games try to be 'realistic', but still allow the character to carry several huge machines guns, mutliple handguns, swords, potions, keys, various items and large ammounts of ammo?"
Then I realized, the Metal Gear Solid series contains nearly every lame video game cliche there is, but it still manages to be awesome. So, pretty much take Metal Gear Solid, and pick out the all things in out, and compare them with other games that don't do them quite so well.